PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00234.1.g00370.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 316aa    MW: 33862.1 Da    PI: 9.4475
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00234.1.g00370.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox375.8e-121641932756
                                   HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  27 aeereeLAkklgLterqVkvWFqNrRakek 56 
                                    +++  LA++lgL  rqV vWFqNrRa+ k
  Zpz_sc00234.1.g00370.1.sm.mk 164 SKQKVALANRLGLRPRQVEVWFQNRRARTK 193
                                   678999**********************98 PP

2HD-ZIP_I/II926.7e-301642292692
                   HD-ZIP_I/II  26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                                   +++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rLeke ++Lr +lk
  Zpz_sc00234.1.g00370.1.sm.mk 164 SKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLR-KLK 229
                                   79************************************************************9.665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.928115195IPR001356Homeobox domain
SMARTSM003894.3E-11117199IPR001356Homeobox domain
SuperFamilySSF466895.72E-12118203IPR009057Homeodomain-like
CDDcd000868.71E-12119196No hitNo description
Gene3DG3DSA:1.10.10.603.9E-16119198IPR009057Homeodomain-like
PfamPF000462.2E-9164193IPR001356Homeobox domain
PRINTSPR000314.6E-5166175IPR000047Helix-turn-helix motif
PROSITE patternPS000270170193IPR017970Homeobox, conserved site
PRINTSPR000314.6E-5175191IPR000047Helix-turn-helix motif
SMARTSM003407.5E-19195238IPR003106Leucine zipper, homeobox-associated
PfamPF021838.2E-9195229IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MMPQQSLDLG LSLGGLASQG SLSSSTTSGQ LSPWAAALNS VVGDARREPQ RHAAADPAGH  60
HGTTMRASTS PDHSVLSSDD SGSNKRDREE LERTGSGGVV RGAAAGSDEE DGADGAGGRK  120
KLRLSKDQAA VLEECFKSHS TLNPVRIFSL LVAVADVLSP FVGSKQKVAL ANRLGLRPRQ  180
VEVWFQNRRA RTKLKQTEVD CEYLKRWCER LADENKRLEK ELADLRKLKA APPQATGAMQ  240
PSSATLTMCP SCRRVATTAS NPQQQQQQCH PKSNVLTTAG NVLPSHCQFF PAAAVDRAGQ  300
STWNAAAAPL VTRELF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187195RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0932881e-82FP093288.1 Phyllostachys edulis cDNA clone: bphylf053m07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964497.11e-114PREDICTED: homeobox-leucine zipper protein HOX2-like
SwissprotQ5VPE36e-90HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2
SwissprotQ84U866e-90HOX2_ORYSI; Homeobox-leucine zipper protein HOX2
TrEMBLK3XYL11e-114K3XYL1_SETIT; Uncharacterized protein
STRINGSi007019m1e-113(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-51homeobox from Arabidopsis thaliana